Great collection!
While I don’t know if 9 is the complete set for the cards with “3D” on the bottom, I do know of another 10 that are 3D. These are from 2003 with a “P” or “EVO” on the bottom.
Another 12 from 2005 here: www.elitefourum.com/t/2005-bandai-carddass-zukancard-seal-sp-set-checklist/30816/1
Hope it helps. Awesome fanart btw, especially the Primal Kyogre one.